I just want to post this back to the community in case somebody finds it helpful.
I recently migrated a Drupal 6 website from Windows to a Mac OS X server. The migration consisted of copying over the doctree + dumping/re-importing the mysql database. Everything worked in the new environment for anonymous users, pages were delivered correctly, clean urls worked too.
All of a sudden, when I try to log into my site at http://reformed-druids.org, I get this message: Fatal error: Call to undefined function check_markup() in /home4/arseneau/public_html/reformed-druids.org/modules/node/node.module on line 1057
I very recently upgraded to 6.31, but everything was fine until just now. How do I fix this?
So I've had some trouble updating/upgrading Tripal. I know my first mistake was not disabling the Tripal modules and extensions when upgrading from v0.3.1b to v1.0. But when I followed the process from the Tripal site and upgraded the core everything seem fine. The update.php ran smooth and updated the core without any errors. After this I tried to start upgrading the other modules/extensions not included in the Tripal Module, like Tripal Analysis Interpro, for example. After running update.php I got a few errors and decided to try to revert to Triapl v0.3.1b.