I searched for updates using the update manager. It found updates for Entity and Rules. I used the automatic method for updating these two APIs. When I tried to navigate back to my website, I was told that the site could not find an include file for Rules. I looked at the directory under SSH, and I found out that Rules had been installed to sites/all/modules/rules/rules instead of sites/all/modules/rules. After I fixed that, I found out that Entity had been installed to sites/all/modules/entity/entity instead of sites/all/modules/entity. In both cases, Drupal was looking for files in sites/all/modules/X and not finding them because the updated files had been in stalled in sites/all/modules/X/X. This suggests this is a problem that is generic (the update manager) and not specific to the packages.
|FAILED: [[SimpleTest]]: [PHP 5.4 MySQL] Unable to apply patch drupal_986616_74.patch. Unable to apply patch. See the log in the details link for more information.|
|FAILED: [[SimpleTest]]: [MySQL] 57,987 pass(es), 50 fail(s), and 1 exception(s).|
|FAILED: [[SimpleTest]]: [MySQL] Unable to apply patch drupal-root_path-986616-64.patch. Unable to apply patch. See the log in the details link for more information.|
|PASSED: [[SimpleTest]]: [MySQL] 48,166 pass(es).|
|FAILED: [[SimpleTest]]: [MySQL] 48,122 pass(es), 1 fail(s), and 0 exception(s).|