Upgrading Drupal

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johnsmith

After about 2 days of pain, I manage to update a Drupal bilingual site to 6.2. Everything is perfect, except I don't have any of the custom navigation. I am very new to Drupal [3 days or so], so I don't know if I am missing something, or it has to do with the upgrade process.
The menu looks like :
-custom parent1
- kid1
- kid2

There is something that does look good to me: "custom parent1" has "navigation" as parent, so actually the tree is:

After update, what I can see is:

I moved the site from one server to another.. and now I can't upload any files at all..

I just keep on getting the error make sure size limit is correct.. This script is the only script I am getting problems with. I have tryed 4 megabytes to 300 still nothing.. My limit is at 400.

I borked my installation, and decided to update to 5.7 (from 5.6) as well as reinstall my gallery2 (2.2.5, not installed yet) and other modules.

Following the instructions in upgrade.txt, I backed up necessary files, uploaded 5.7, pointed the config at my DB, uploaded newer versions of my modules.

I am getting this error when I run the update.php script.

An error occurred. http://www.bradrice.com/drupal/update.php?id=3&op=do
Fatal error: Call to undefined function taxonomy_get_vocabularies() in /Library/WebServer/WebSites/bradrice/bradrice.com/drupal/modules/forum/forum.install on line 113

My site seems to have updated ok as I can log in and it looks ok, but this concerns me. Any help on this would be appreciated.

I recently upgraded my site form 5.7 to 6.2. Because I got soem php errors in the log I installed the Schema module to look for possible database errors.

Below is what schema returns as mismatches.

The differences seem trivial to me? Are there any that need to fixed?. (or should the database be 100% correct?)

Tables for which the schema and database are different.
node

*
node_revisions
o column log:
declared: array('type' => 'text', 'size' => 'big', 'not null' => TRUE)
actual: array('type' => 'text', 'size' => 'big', 'not null' => FALSE)
*
node_type
o column name:
declared: array('type' => 'varchar', 'length' => 255, 'not null' => TRUE, 'default' => '')
actual: array('type' => 'varchar', 'length' => '255', 'not null' => TRUE)

search

*
search_dataset
o column type:
declared: array('type' => 'varchar', 'length' => 16, 'not null' => FALSE)
actual: array('type' => 'varchar', 'length' => '16', 'not null' => FALSE, 'default' => '')
*
search_index
o column type:
declared: array('type' => 'varchar', 'length' => 16, 'not null' => FALSE)