I managed to update a site properly only to find that though I have no errors my custom content fields are missing (like highslide images and filefield insert). Not only are they missing from previously created content but also when I go to create new content. However my text and taxonomy are all still there. I didn't lose the nodes themselves.
I'd like to figure out where i went wrong and if there is a way to correct it? Fortunately I did backup the site and database beforehand, and I guess I could revert to the old site, (though I'm not dead sure how to do that.)
So I followed the procedure here:
1. Backed up database
2. Backed up the files.
3. Put site in maintenance mode
4. Changed from a contrib theme to garland
5. Uploaded Drupal 6.13 (from 6.12).
6. Replaced the Sites folder with my old one
7. Disabled Contributed modules
8. Ran update.php (no problems)
As I had modules needing updating, I next
9. Removed the out-of-date modules
10. Uploaded updated modules
11. Enabled the contributed modules
12. Ran Update.php again (no problems)
13. enabled theme
14. Put site back online.
In retrospect I guess I should have updated the modules first before updating the core? Meanwhile though, all my highslide images are missing, and when I go to "create content, Blog Entry" (that I had customized with CCK), the custom fields are missing.