mica 7.x-1.30

The release includes the following improvements:

• Add harmonization informations to Dataset Variables for each Study of the Dataset: harmonization status, script, comment, etc.
• Better integration with Opal: export Datasets as Opal view.

Bug

• [MICA-361] - Full text search & facets
• [MICA-418] - Error when deleting a Dataset
• [MICA-485] - Mica update - Exception: SolrPhpClient library not found
• [MICA-493] - Study Description Form - Missing fleds in section "Recruitment procedures"
• [MICA-495] - field_contacts_ref cannot be longer than 128 characters
• [MICA-505] - Remove Cross-sectional and Longitudinal Follow-up options form Data Sources in study Word document
• [MICA-510] - When adding a study to a dataset, the study is added twice
• [MICA-512] - Manage upgrade of modified modules
• [MICA-513] - Rename Data Dictionnary page to Variables
• [MICA-514] - Sort variables by index
• [MICA-515] - Missing dimension on variable page
• [MICA-516] - Group dimensions
• [MICA-517] - Field groups tabs are broken for variable edition
• [MICA-518] - Missing dimension on variable importer and taxonomie importer
• [MICA-519] - Remove default value for essence field for variable
• [MICA-520] - Variable importer
• [MICA-524] - Reorder Variables row weights ranges from -10 to 10
• [MICA-526] - Dataset list view
• [MICA-528] - Use icon for missing categories
• [MICA-529] - Dimension label are not black
• [MICA-531] - The Index contains a value for which -.value() cannot be called (see for source_or_recruitment field that was changed to a taxonomy)
• [MICA-532] - Variable search displays non published variables
• [MICA-533] - Moderated variable creation
• [MICA-535] - Bug in the filter of dimension Encocrine, nutritional and metabolic diseases.
• [MICA-537] - remove variables when a dataset is deleted
• [MICA-538] - EntityMetadataWrapperException
• [MICA-542] - Rename "Script status" to "Status" on StudyVariableAttribute view page
• [MICA-543] - Add Study facet for variable on Variable search page
• [MICA-544] - CSV export html/not html
• [MICA-548] - Add type to dataset
• [MICA-550] - Menus are not displayed correctly in IE9
• [MICA-553] - Fix link "Import variables" when viewing a dataset, it no longer uses Feeds Importers
• [MICA-554] - SSL connection to Opal server fails (unknown protocol)
• [MICA-563] - Fix Study content menu
• [MICA-565] - Connection to opal fails when opal url ends with slash
• [MICA-566] - Reorder Variables
• [MICA-568] - Wrong breadcrumb for variable
• [MICA-571] - Rename Studies facet block
• [MICA-573] - Variable view from Queries
• [MICA-574] - Dataset reviewer does not see unpublished content
• [MICA-575] - Major error when editing bioshare content type
• [MICA-576] - Notice: Undefined index in block_form_user_profile_form_alter()
• [MICA-577] - Harmonization tables must check for study, variable and sav node accesses
• [MICA-578] - Dataset queries do not check study and variable node access
• [MICA-579] - Variable statistics visibility must be checked against published query permissions
• [MICA-583] - Variable stats
• [MICA-584] - Variable details in query result
• [MICA-585] - Harmonization table - variable description on mouse over

Code Review

• [MICA-484] - Check if we still use mica_core.feeds.inc

Improvement

• [MICA-481] - Add study facet to variable search page
• [MICA-501] - Add questionnaire files to Study
• [MICA-525] - Add Unit field to Variable
• [MICA-530] - Export of Dataschema variables, add label of categories
• [MICA-536] - Improve the import of Opal Variables
• [MICA-547] - Change icons for impossible and complete harmonization status
• [MICA-555] - Two dimensions to add
• [MICA-561] - Features performance
• [MICA-562] - Introduction texts for dataset pages
• [MICA-567] - New variable and menu link
• [MICA-570] - 2 new dimensions Individual Participant measures and laboratory... should not be displayed with links
• [MICA-572] - Add a facet for dataset type in the variable index
• [MICA-580] - Add a shorcut for clearing all facet criteria from a search page
• [MICA-582] - Save the selected cross variable in dataset query

Task

• [MICA-496] - Export datasets' variables as an opal view
• [MICA-509] - Document the view modes available for a study and other custom content types
• [MICA-552] - remove links: study -> dataset and dataset -> variables
• [MICA-558] - Allow variable crossing queries

User Story

• [MICA-497] - Harmonization Datasets

Sub-task

• [MICA-498] - Create StudyVariable content type
• [MICA-499] - Dataset harmonization table view
• [MICA-500] - Add StudyVariables table to Variable page
• [MICA-502] - Add a task on the dataset view page to export all variables to an opal view
• [MICA-504] - Define the render() function to render the opal view xml file
• [MICA-506] - Update Variables with algo from Opal
• [MICA-507] - Export the endpoint configuration with the mica_opal module
• [MICA-508] - After a call to the REST server, make sure that the user session is not expired
• [MICA-527] - Create a hook_update to migrate existing data
• [MICA-551] - Error when editing draft