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This module allows to specify two folders, one for CSS and one for JS where the stylesheets and javascripts files are located respectively.

The module creates two sub-folders under your files folder:

files/customcssjs/css
files/customcssjs/js

Just put your files in those folders and they will be added in the header, so you can set extra parameters and scripts.

The 6.x-dev version is trying to solve the problem that the module does not override the themes styles. Please, read #532206: Themes modifying the registry override this module functionality. to see the latest news about this.
Currently, it needs to be tested so I can make a stable release.

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