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Users are getting unsubscribed from lists no matter what.
This will fix it in emf_user():
// unsubscribe from all known lists
if (variable_get('emf_account_status_sync', 0)) {
$lists = emf_db_get_lists();
foreach ($lists as $list) {
emf_db_save_request('unsubscribe', $mail, $list->lid);
}
}