Regions are displayed, but there are no content!

Hi,

Using pixture_reloaded as base theme for my site, but all the regions for registered users (ONLY!) are acting as if they are not empty, like:

<div class="three-3x33 gpanel clearfix">
<div class="region region-three-33-first">
<a id="context-block-region-three_33_first" class="context-block-region">GP 3 x 33% - First</a>
</div>
<div class="region region-three-33-second">
<a id="context-block-region-three_33_second" class="context-block-region">GP 3 x 33% - Second</a>
</div>
<div class="region region-three-33-third">
<a id="context-block-region-three_33_third" class="context-block-region">GP 3 x 33% - Third</a>
</div>
</div>

Of course, they are disable with css display:none, but still it creates headache with layout

The same for all regions.
tryed clearing caches and other similar tricks, no change.
The same also with 7.x-2.x-dev