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Including misc/ajax.js with drupal_add_js() overrides the weight order defined in system.module's hook_library() causing a bunch of contrib including Views, CTools and Boxes to break.
The patch posted here http://drupal.org/node/1532566#comment-5869022 resolves this.
Comments
Comment #1
manuelBS CreditAttribution: manuelBS commentedYes, same Problem breaks my quick tabs ajax loading
Comment #2
rogical CreditAttribution: rogical commentedit's already fixed #1532566: AJAX should be loaded as library to prevent conflicts with other modules