Dear Omega Community,
I am aware that there as already been an issue reported on this topic. It was closed but I still encountered problems:
When including a custom js-file for a subtheme with an underscore in the machine name, adding the file by way of the .info file did not work. Without the underscore in the name, it does work. I have changed nothing else so I'm guessing that it depended on the underscore.
This is not really a problem, except that when generating a subtheme, every space is automatically turned into an underscore for the machine name. Any beginner will automatically walk into this trap. Maybe it were possible to turn the space into a hyphen or even better, just delete the space altogether.
Best wishes,
Kampfzwerg