Remove default Shortcuts configured in lightning.install

I'm trying to disable the Shortcut module on my site (which uses Configuration Management/core CMI for configuration deployment), but due to the way BLT runs it's tests in a clean environment, using the Lightning install profile, the Shortcut module is always enabled, and there are two entities created by Lightning which cause config-import to fail:

Import the listed configuration changes? (y/n): y
Drupal\Core\Config\ConfigImporterException: There were errors        [error]
validating the config synchronization. in
Drupal\Core\Config\ConfigImporter->validate() (line 728 of
/home/travis/build/acquia-pso/project/docroot/core/lib/Drupal/Core/Config/ConfigImporter.php).
The import failed due for the following reasons:                     [error]
Entities exist of type <em class="placeholder">Shortcut link</em> and
<em class="placeholder"></em> <em class="placeholder">Default</em>.
These entities need to be deleted before importing.

I'd like to propose removing those two entities from the default install. They could be added elsewhere somehow, but since they're part of the core install, this means you can't have automated clean install processes (e.g. using CMI, Drush with a force install, etc.) that import configuration without the Shortcut module enabled.