See the following issues:
Unfortunately there were alot of bug fixes committed as well so need to do thorough checking.
Panelizer is simply just updated to 3.3 as we have no patches.
projects[panelizer][version] = 3.3 projects[panelizer][subdir] = contrib
Panels three of our patches we were early adopters on have now been officially committed:
projects[panels][patch] = http://drupal.org/files/issues/panels-1588212-10.patch projects[panels][patch] = http://drupal.org/files/issues/2391073-11-cache_mini_panels_load.patch projects[panels][patch] = http://drupal.org/files/issues/deprecated-constructor-in-php-7-2557061-3.patch
So the new make file for panels is:
projects[panels][version] = 3.6 projects[panels][subdir] = contrib projects[panels][patch] = http://drupal.org/files/issues/panelizer_is-1402860-82-fix-ipe-end-js-alert.patch projects[panels][patch] = http://drupal.org/files/issues/i18n_panels_uuid_undefined-2192355-01.patch projects[panels][patch] = http://drupal.org/files/issues/panels-re-generated-uuids-on-clone.patch projects[panels][patch] = http://drupal.org/files/issues/blocks_dont_support_optional_context-2508433-1.patch