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I use to download module via git:
git clone --branch 7.x-2.x http://git.drupal.org/project/libraries.git
And try enable Colorbox, Colorbox module say, that is not compatible with library, need libraries (2.x).
Please fix it.
Comments
Comment #1
tstoecklerYes, this is tedious, but it is how things are supposed to work when you check out modules from Git.
Please use the Git deploy module, that should resolve the issue for you.