PHP and CSS errors

Notice: Undefined index: logo_path in system_theme_settings_validate() (line 643 of \modules\system\system.admin.inc).

Notice: Undefined index: favicon_path in system_theme_settings_validate() (line 649 of \nc\modules\system\system.admin.inc).

Notice: Undefined index: logo_upload in system_theme_settings_submit() (line 706 of \modules\system\system.admin.inc).

Notice: Undefined index: favicon_upload in system_theme_settings_submit() (line 713 of \modules\system\system.admin.inc).

Shows up everytime I save the settings.

Using Taxonomy Display to display a view instead of a the default taxonomy listing causes the sidebar to drop to the bottom.
No idea why... still hunting.

Apologies; thought Taxonomy Display was part of the theme package.

The second sidebar is defined in both the template code and the .info file yet it does not appear in the theme. Can't seem to figure that one out either.

The superfish menu was awful until I went into the navigation.css and commented out two blocks of markup.
Also, disabled shadows.

The settings page seems to perpetually think there's a sidebar active and shifts itself over.

To the author of this template: Yeah, it's nice. Really nice (reeeaaally nice), in a lot of ways. However it's got some issues that need ironing out; and without documentation it takes a "bit of pulling before it starts up."