Relative links must be converted to absolute links before create the PDF, because if they keep as relatives, don't work.
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When you use a link in your views page, like http://mysite.org/content/example, this work perfect, but if you use a relative link, like /content/example, this works perfect in your site, but it doesn't work in the PDF.
And you cannot override the link in the field? I believe this has to be done in the field views, and not in the render PDF.
Please open a new issue if you still have this problem.
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