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The commerce_cart_order_convert() function just adds "commerce_customer_" to the front of the profile type to determine its reference field.
This means that profile types created by contributed modules result in a crash like this one:
EntityMetadataWrapperException: Unknown data property commerce_customer_<em>type</em>. in EntityStructureWrapper->getPropertyInfo() (line 339 of sites/all/modules/entity/includes/entity.wrapper.inc). The website encountered an unexpected error. Please try again later.
I think this is the only occurrence of this in Commerce.
FAILED: [[SimpleTest]]: [MySQL] Unable to apply patch by-instances-1838936.patch. Unable to apply patch. See the log in the details link for more information. View