I have a need to patch the fitvids library via drush make during installation of a profile. I note that the module includes its own make file and downloads the library itself automatically. I believe that this makes it impossible for me to patch the library during install. If it is possible then please let me know how to do it.

I would suggest that the make file you have becomes an example file which will not be executed automatically. See the following discussion to see other possible problems:
http://davehall.com.au/blog/dave/2011/05/17/drush-make-and-module-depend...

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murrayw’s picture

murrayw CreditAttribution: murrayw commented
Status: Active » Closed (works as designed)

I'm closing this because the library doesn't need to be patched. Sorry for the noise.