? .DS_Store
? .cache
? .git
? .project
? .settings
? diff.patch
? logs
? modules/.DS_Store
? modules/simpletest/tests/file.test
? modules/simpletest/tests/file_test.info
? modules/simpletest/tests/file_test.module
? sites/all/modules
? sites/default/files
? sites/default/settings.php
? sites/default/test
Index: includes/common.inc
===================================================================
RCS file: /cvs/drupal/drupal/includes/common.inc,v
retrieving revision 1.790
diff -u -p -r1.790 common.inc
--- includes/common.inc	6 Sep 2008 15:06:10 -0000	1.790
+++ includes/common.inc	7 Sep 2008 00:07:45 -0000
@@ -1815,7 +1815,7 @@ function drupal_build_css_cache($types, 
     $data = implode('', $matches[0]) . $data;
 
     // Create the CSS file.
-    file_save_data($data, $csspath . '/' . $filename, FILE_EXISTS_REPLACE);
+    file_save_data_plain($data, $csspath . '/' . $filename, FILE_EXISTS_REPLACE);
   }
   return $csspath . '/' . $filename;
 }
@@ -1916,7 +1916,7 @@ function _drupal_load_stylesheet($matche
  * Delete all cached CSS files.
  */
 function drupal_clear_css_cache() {
-  file_scan_directory(file_create_path('css'), '.*', array('.', '..', 'CVS'), 'file_delete', TRUE);
+  file_scan_directory(file_create_path('css'), '.*', array('.', '..', 'CVS'), 'file_delete_plain', TRUE);
 }
 
 /**
@@ -2279,7 +2279,7 @@ function drupal_build_js_cache($files, $
     }
 
     // Create the JS file.
-    file_save_data($contents, $jspath . '/' . $filename, FILE_EXISTS_REPLACE);
+    file_save_data_plain($contents, $jspath . '/' . $filename, FILE_EXISTS_REPLACE);
   }
 
   return $jspath . '/' . $filename;
@@ -2290,6 +2290,7 @@ function drupal_build_js_cache($files, $
  */
 function drupal_clear_js_cache() {
   file_scan_directory(file_create_path('js'), '.*', array('.', '..', 'CVS'), 'file_delete', TRUE);
+  file_scan_directory(file_create_path('js'), '.*', array('.', '..', 'CVS'), 'file_delete_plain', TRUE);
   variable_set('javascript_parsed', array());
 }
 
Index: includes/file.inc
===================================================================
RCS file: /cvs/drupal/drupal/includes/file.inc,v
retrieving revision 1.130
diff -u -p -r1.130 file.inc
--- includes/file.inc	6 Sep 2008 08:36:19 -0000	1.130
+++ includes/file.inc	7 Sep 2008 00:07:45 -0000
@@ -10,6 +10,19 @@
  * @defgroup file File interface
  * @{
  * Common file handling functions.
+ *
+ * Fields on the file object:
+ * - fid - Primary Key: Unique files ID.
+ * - uid - The {users}.uid of the user who is associated with the file.
+ *   filename - Name of the file with no path components. This may differ
+ *   from the basename of the filepath if the file is renamed to avoid
+ *   overwriting an existing file.
+ * - filepath - Path of the file relative to Drupal root.
+ * - filemime - The file's MIME type.
+ * - filesize - The size of the file in bytes.
+ * - status - A flag indicating whether file is temporary (1) or permanent (0).
+ *     Files that are temporary will removed be removed during
+ * - timestamp' UNIX timestamp for the date the file was added to the database.
  */
 
 /**
@@ -29,17 +42,18 @@ define('FILE_DOWNLOADS_PUBLIC', 1);
 define('FILE_DOWNLOADS_PRIVATE', 2);
 
 /**
- * Flag used by file_create_directory() -- create directory if not present.
+ * Flag used by file_check_directory() -- create directory if not present.
  */
 define('FILE_CREATE_DIRECTORY', 1);
 
 /**
- * Flag used by file_create_directory() -- file permissions may be changed.
+ * Flag used by file_check_directory() -- file permissions may be changed.
  */
 define('FILE_MODIFY_PERMISSIONS', 2);
 
 /**
- * Flag for dealing with existing files: Append number until filename is unique.
+ * Flag for dealing with existing files: Append number until filename is
+ * unique.
  */
 define('FILE_EXISTS_RENAME', 0);
 
@@ -77,7 +91,8 @@ define('FILE_STATUS_PERMANENT', 1);
  * @return A string containing a URL that can be used to download the file.
  */
 function file_create_url($path) {
-  // Strip file_directory_path from $path. We only include relative paths in urls.
+  // Strip file_directory_path from $path. We only include relative paths in
+  // URLs.
   if (strpos($path, file_directory_path() . '/') === 0) {
     $path = trim(substr($path, strlen(file_directory_path())), '\\/');
   }
@@ -93,28 +108,30 @@ function file_create_url($path) {
  * Make sure the destination is a complete path and resides in the file system
  * directory, if it is not prepend the file system directory.
  *
- * @param $dest A string containing the path to verify. If this value is
+ * @param $destination A string containing the path to verify. If this value is
  *   omitted, Drupal's 'files' directory will be used.
  * @return A string containing the path to file, with file system directory
  *   appended if necessary, or FALSE if the path is invalid (i.e. outside the
  *   configured 'files' or temp directories).
  */
-function file_create_path($dest = 0) {
+function file_create_path($destination = NULL) {
   $file_path = file_directory_path();
-  if (!$dest) {
+  if (!$destination) {
     return $file_path;
   }
-  // file_check_location() checks whether the destination is inside the Drupal files directory.
-  if (file_check_location($dest, $file_path)) {
-    return $dest;
-  }
-  // check if the destination is instead inside the Drupal temporary files directory.
-  else if (file_check_location($dest, file_directory_temp())) {
-    return $dest;
+  // file_check_location() checks whether the destination is inside the Drupal
+  // files directory.
+  if (file_check_location($destination, $file_path)) {
+    return $destination;
+  }
+  // Check if the destination is instead inside the Drupal temporary files
+  // directory.
+  else if (file_check_location($destination, file_directory_temp())) {
+    return $destination;
   }
   // Not found, try again with prefixed directory path.
-  else if (file_check_location($file_path . '/' . $dest, $file_path)) {
-    return $file_path . '/' . $dest;
+  else if (file_check_location($file_path . '/' . $destination, $file_path)) {
+    return $file_path . '/' . $destination;
   }
   // File not found.
   return FALSE;
@@ -133,7 +150,7 @@ function file_create_path($dest = 0) {
  *   work, a form error will be set preventing them from saving the settings.
  * @return FALSE when directory not found, or TRUE when directory exists.
  */
-function file_check_directory(&$directory, $mode = 0, $form_item = NULL) {
+function file_check_directory(&$directory, $mode = FALSE, $form_item = NULL) {
   $directory = rtrim($directory, '/\\');
 
   // Check if directory exists.
@@ -152,9 +169,13 @@ function file_check_directory(&$director
 
   // Check to see if the directory is writable.
   if (!is_writable($directory)) {
-    if (($mode & FILE_MODIFY_PERMISSIONS) && !@chmod($directory, 0775)) {
-      form_set_error($form_item, t('The directory %directory is not writable', array('%directory' => $directory)));
-      watchdog('file system', 'The directory %directory is not writable, because it does not have the correct permissions set.', array('%directory' => $directory), WATCHDOG_ERROR);
+    // If not able to modify permissions, or if able to, but chmod
+    // fails, return false.
+    if (!$mode || (($mode & FILE_MODIFY_PERMISSIONS) && !@chmod($directory, 0775))) {
+      if ($form_item) {
+	form_set_error($form_item, t('The directory %directory is not writable', array('%directory' => $directory)));
+	watchdog('file system', 'The directory %directory is not writable, because it does not have the correct permissions set.', array('%directory' => $directory), WATCHDOG_ERROR);
+      }
       return FALSE;
     }
   }
@@ -202,7 +223,8 @@ function file_check_path(&$path) {
 /**
  * Check if a file is really located inside $directory. Should be used to make
  * sure a file specified is really located within the directory to prevent
- * exploits.
+ * exploits. Note that the file or path being checked does not actually need
+ * to exist yet.
  *
  * @code
  *   // Returns FALSE:
@@ -211,7 +233,8 @@ function file_check_path(&$path) {
  *
  * @param $source A string set to the file to check.
  * @param $directory A string where the file should be located.
- * @return FALSE for invalid path or the real path of the source.
+ * @return FALSE if the path does not exist in the directory;
+ *   otherwise, the real path of the source.
  */
 function file_check_location($source, $directory = '') {
   $check = realpath($source);
@@ -219,7 +242,7 @@ function file_check_location($source, $d
     $source = $check;
   }
   else {
-    // This file does not yet exist
+    // This file does not yet exist.
     $source = realpath(dirname($source)) . '/' . basename($source);
   }
   $directory = realpath($directory);
@@ -230,88 +253,122 @@ function file_check_location($source, $d
 }
 
 /**
- * Copies a file to a new location. This is a powerful function that in many ways
+ * Copy a file to a new location and adds a file record to the database.
+ *
+ * This function should be used when manipulating files that have records
+ * stored in the database. This is a powerful function that in many ways
  * performs like an advanced version of copy().
- * - Checks if $source and $dest are valid and readable/writable.
- * - Performs a file copy if $source is not equal to $dest.
- * - If file already exists in $dest either the call will error out, replace the
- *   file or rename the file based on the $replace parameter.
- *
- * @param $source A string specifying the file location of the original file.
- *   This parameter will contain the resulting destination filename in case of
- *   success.
- * @param $dest A string containing the directory $source should be copied to.
- *   If this value is omitted, Drupal's 'files' directory will be used.
- * @param $replace Replace behavior when the destination file already exists.
- *   - FILE_EXISTS_REPLACE - Replace the existing file
- *   - FILE_EXISTS_RENAME - Append _{incrementing number} until the filename is unique
+ * - Checks if $source and $destination are valid and readable/writable.
+ * - Checks that $source is not equal to $destination, if they are an error
+ *   is reported.
+ * - If file already exists in $destination either the call will error out,
+ *   replace the file or rename the file based on the $replace parameter.
+ * - Adds the new file to the files database. If the source file is a
+ *   temporary file, the resulting file will also be a temporary file.
+ *   @see file_save_upload about temporary files.
+ *
+ * @param $source
+ *   A file object.
+ * @param $destination
+ *   A string containing the directory $source should be copied to. If this
+ *   value is omitted, Drupal's 'files' directory will be used.
+ * @param $replace
+ *   Replace behavior when the destination file already exists:
+ *   - FILE_EXISTS_REPLACE - Replace the existing file.
+ *   - FILE_EXISTS_RENAME - Append _{incrementing number} until the filename is
+ *                          unique.
  *   - FILE_EXISTS_ERROR - Do nothing and return FALSE.
- * @return True for success, FALSE for failure.
+ * @return
+ *   File object if the copy is successful, or FALSE in the event of an error.
+ *
+ * @see file_copy_plain()
  */
-function file_copy(&$source, $dest = 0, $replace = FILE_EXISTS_RENAME) {
-  $dest = file_create_path($dest);
-
-  $directory = $dest;
-  $basename = file_check_path($directory);
-
-  // Make sure we at least have a valid directory.
-  if ($basename === FALSE) {
-    $source = is_object($source) ? $source->filepath : $source;
-    drupal_set_message(t('The selected file %file could not be uploaded, because the destination %directory is not properly configured.', array('%file' => $source, '%directory' => $dest)), 'error');
-    watchdog('file system', 'The selected file %file could not be uploaded, because the destination %directory could not be found, or because its permissions do not allow the file to be written.', array('%file' => $source, '%directory' => $dest), WATCHDOG_ERROR);
-    return FALSE;
-  }
-
-  // Process a file upload object.
-  if (is_object($source)) {
-    $file = $source;
-    $source = $file->filepath;
-    if (!$basename) {
-      $basename = $file->filename;
+function file_copy($source, $destination = NULL, $replace = FILE_EXISTS_RENAME) {
+  if ($filepath = file_copy_plain($source->filepath, $destination, $replace)) {
+    $file = clone $source;
+    $file->fid      = NULL;
+    $file->filename = basename($filepath);
+    $file->filepath = $filepath;
+    if ($file = file_save($file)) {
+      module_invoke_all('file_copy', $file, $source);
+      return $file;
     }
   }
+  return FALSE;
+}
 
+/**
+ * Copy a file to a new location without saving a record in the database.
+ *
+ * This is a powerful function that in many ways performs like an advanced
+ * version of copy().
+ * - Checks if $source and $destination are valid and readable/writable.
+ * - Checks that $source is not equal to $destination, if they are an error
+ *   is reported.
+ * - If file already exists in $destination either the call will error out,
+ *   replace the file or rename the file based on the $replace parameter.
+ *
+ * @param $source
+ *   A string specifying the file location of the original file.
+ * @param $destination
+ *   A string containing the directory $source should be copied to. If this
+ *   value is omitted, Drupal's 'files' directory will be used.
+ * @param $replace
+ *   Replace behavior when the destination file already exists:
+ *   - FILE_EXISTS_REPLACE - Replace the existing file.
+ *   - FILE_EXISTS_RENAME - Append _{incrementing number} until the filename is
+ *                          unique.
+ *   - FILE_EXISTS_ERROR - Do nothing and return FALSE.
+ * @return
+ *   The path to the new file, or FALSE in the event of an error.
+ *
+ * @see file_copy()
+ */
+function file_copy_plain($source, $destination = NULL, $replace = FILE_EXISTS_RENAME) {
   $source = realpath($source);
   if (!file_exists($source)) {
-    drupal_set_message(t('The selected file %file could not be copied, because no file by that name exists. Please check that you supplied the correct filename.', array('%file' => $source)), 'error');
+    drupal_set_message(t('The specified file %file could not be copied, because no file by that name exists. Please check that you supplied the correct filename.', array('%file' => $source)), 'error');
     return FALSE;
   }
 
-  // If the destination file is not specified then use the filename of the source file.
-  $basename = $basename ? $basename : basename($source);
-  $dest = $directory . '/' . $basename;
+  $destination = file_create_path($destination);
+  $directory = $destination;
+  $basename = file_check_path($directory);
 
-  // Make sure source and destination filenames are not the same, makes no sense
-  // to copy it if they are. In fact copying the file will most likely result in
-  // a 0 byte file. Which is bad. Real bad.
-  if ($source != realpath($dest)) {
-    if (!$dest = file_destination($dest, $replace)) {
-      drupal_set_message(t('The selected file %file could not be copied, because a file by that name already exists in the destination.', array('%file' => $source)), 'error');
-      return FALSE;
-    }
+  // Make sure we at least have a valid directory.
+  if ($basename === FALSE) {
+    drupal_set_message(t('The specified file %file could not be copied, because the destination %directory is not properly configured.', array('%file' => $source, '%directory' => $destination)), 'error');
+    return FALSE;
+  }
 
-    if (!@copy($source, $dest)) {
-      drupal_set_message(t('The selected file %file could not be copied.', array('%file' => $source)), 'error');
-      return FALSE;
-    }
+  // If the destination file is not specified then use the filename of the
+  // source file.
+  $basename = $basename ? $basename : basename($source);
+  $destination = file_destination($directory . '/' . $basename, $replace);
 
-    // Give everyone read access so that FTP'd users or
-    // non-webserver users can see/read these files,
-    // and give group write permissions so group members
-    // can alter files uploaded by the webserver.
-    @chmod($dest, 0664);
+  if ($destination === FALSE) {
+    drupal_set_message(t('The specified file %file could not be copied because a file by that name already exists in the destination.', array('%file' => $source)), 'error');
+    return FALSE;
   }
-
-  if (isset($file) && is_object($file)) {
-    $file->filename = $basename;
-    $file->filepath = $dest;
-    $source = $file;
+  // Make sure source and destination filenames are not the same, makes no
+  // sense to copy it if they are. In fact copying the file will most likely
+  // result in a 0 byte file. Which is bad. Real bad.
+  if ($source == realpath($destination)) {
+    drupal_set_message(t('The specified file %file was not copied because it would overwrite itself.', array('%file' => $source)), 'error');
+    return FALSE;
   }
-  else {
-    $source = $dest;
+  if (!@copy($source, $destination)) {
+    drupal_set_message(t('The specified file %file could not be copied.', array('%file' => $source)), 'error');
+    return FALSE;
   }
 
-  return TRUE; // Everything went ok.
+  // Give everyone read access so that FTP'd users or
+  // non-webserver users can see/read these files,
+  // and give group write permissions so group members
+  // can alter files uploaded by the webserver.
+  @chmod($destination, 0664);
+
+  return $destination;
 }
 
 /**
@@ -320,9 +377,9 @@ function file_copy(&$source, $dest = 0, 
  *
  * @param $destination A string specifying the desired path.
  * @param $replace Replace behavior when the destination file already exists.
- *   - FILE_EXISTS_REPLACE - Replace the existing file
+ *   - FILE_EXISTS_REPLACE - Replace the existing file.
  *   - FILE_EXISTS_RENAME - Append _{incrementing number} until the filename is
- *     unique
+ *                          unique.
  *   - FILE_EXISTS_ERROR - Do nothing and return FALSE.
  * @return The destination file path or FALSE if the file already exists and
  *   FILE_EXISTS_ERROR was specified.
@@ -330,6 +387,10 @@ function file_copy(&$source, $dest = 0, 
 function file_destination($destination, $replace) {
   if (file_exists($destination)) {
     switch ($replace) {
+      case FILE_EXISTS_REPLACE:
+        // Do nothing here, we want to overwrite the existing file.
+        break;
+
       case FILE_EXISTS_RENAME:
         $basename = basename($destination);
         $directory = dirname($destination);
@@ -337,7 +398,7 @@ function file_destination($destination, 
         break;
 
       case FILE_EXISTS_ERROR:
-        drupal_set_message(t('The selected file %file could not be copied, because a file by that name already exists in the destination.', array('%file' => $destination)), 'error');
+        drupal_set_message(t('The specified file %file could not be copied, because a file by that name already exists in the destination.', array('%file' => $destination)), 'error');
         return FALSE;
     }
   }
@@ -345,38 +406,74 @@ function file_destination($destination, 
 }
 
 /**
- * Moves a file to a new location.
- * - Checks if $source and $dest are valid and readable/writable.
- * - Performs a file move if $source is not equal to $dest.
- * - If file already exists in $dest either the call will error out, replace the
- *   file or rename the file based on the $replace parameter.
- *
- * @param $source A string specifying the file location of the original file.
- *   This parameter will contain the resulting destination filename in case of
- *   success.
- * @param $dest A string containing the directory $source should be copied to.
- *   If this value is omitted, Drupal's 'files' directory will be used.
- * @param $replace Replace behavior when the destination file already exists.
- *   - FILE_EXISTS_REPLACE - Replace the existing file
- *   - FILE_EXISTS_RENAME - Append _{incrementing number} until the filename is unique
+ * Move a file to a new location and update the file's database entry.
+ *
+ * Moving a file is performed by copying the file to the new location and then
+ * deleting the original.
+ * - Checks if $source and $destination are valid and readable/writable.
+ * - Performs a file move if $source is not equal to $destination.
+ * - If file already exists in $destination either the call will error out,
+ *   replace the file or rename the file based on the $replace parameter.
+ * - Adds the new file to the files database.
+ *
+ * @param $source
+ *   A file object.
+ * @param $destination
+ *   A string containing the directory $source should be copied to. If this
+ *   value is omitted, Drupal's 'files' directory will be used.
+ * @param $replace
+ *   Replace behavior when the destination file already exists:
+ *   - FILE_EXISTS_REPLACE - Replace the existing file.
+ *   - FILE_EXISTS_RENAME - Append _{incrementing number} until the filename is
+ *                          unique.
  *   - FILE_EXISTS_ERROR - Do nothing and return FALSE.
- * @return TRUE for success, FALSE for failure.
+ * @return
+ *   Resulting file object for success, or FALSE in the event of an error.
+ *
+ * @see file_move_plain()
  */
-function file_move(&$source, $dest = 0, $replace = FILE_EXISTS_RENAME) {
-  $path_original = is_object($source) ? $source->filepath : $source;
-
-  if (file_copy($source, $dest, $replace)) {
-    $path_current = is_object($source) ? $source->filepath : $source;
-
-    if ($path_original == $path_current || file_delete($path_original)) {
-      return TRUE;
+function file_move($source, $destination = NULL, $replace = FILE_EXISTS_RENAME) {
+  if ($filepath = file_move_plain($source->filepath, $destination, $replace)) {
+    $file = clone $source;
+    $file->filename = basename($filepath);
+    $file->filepath = $filepath;
+    if ($file = file_save($file)) {
+      module_invoke_all('file_move', $file, $source);
+      return $file;
     }
-    drupal_set_message(t('The removal of the original file %file has failed.', array('%file' => $path_original)), 'error');
+    drupal_set_message(t('The removal of the original file %file has failed.', array('%file' => $source->filepath)), 'error');
   }
   return FALSE;
 }
 
 /**
+ * Move a file to a new location but make no changes to the database.
+ *
+ * @param $source
+ *   A string specifying the file location of the original file.
+ * @param $destination
+ *   A string containing the directory $source should be copied to. If this
+ *   value is omitted, Drupal's 'files' directory will be used.
+ * @param $replace
+ *   Replace behavior when the destination file already exists:
+ *   - FILE_EXISTS_REPLACE - Replace the existing file.
+ *   - FILE_EXISTS_RENAME - Append _{incrementing number} until the filename is
+ *                          unique.
+ *   - FILE_EXISTS_ERROR - Do nothing and return FALSE.
+ * @return
+ *   The filepath of the moved file, or FALSE in the event of an error.
+ *
+ * @see file_move()
+ */
+function file_move_plain($source, $destination = NULL, $replace = FILE_EXISTS_RENAME) {
+  $filepath = file_copy_plain($source, $destination, $replace);
+  if ($filepath == FALSE || file_delete_plain($source) == FALSE) {
+    return FALSE;
+  }
+  return $filepath;
+}
+
+/**
  * Munge the filename as needed for security purposes. For instance the file
  * name "exploit.php.pps" would become "exploit.php_.pps".
  *
@@ -438,9 +535,9 @@ function file_unmunge_filename($filename
  * @return
  */
 function file_create_filename($basename, $directory) {
-  $dest = $directory . '/' . $basename;
+  $destination = $directory . '/' . $basename;
 
-  if (file_exists($dest)) {
+  if (file_exists($destination)) {
     // Destination file already exists, generate an alternative.
     if ($pos = strrpos($basename, '.')) {
       $name = substr($basename, 0, $pos);
@@ -452,45 +549,106 @@ function file_create_filename($basename,
 
     $counter = 0;
     do {
-      $dest = $directory . '/' . $name . '_' . $counter++ . $ext;
-    } while (file_exists($dest));
+      $destination = $directory . '/' . $name . '_' . $counter++ . $ext;
+    } while (file_exists($destination));
   }
 
-  return $dest;
+  return $destination;
+}
+
+/**
+ * Delete a file and its database record.
+ *
+ * @param $path
+ *   A file object.
+ * @param $force
+ *   Boolean indicating that the file should be deleted even if
+ *   hook_file_references() reports that the file is in use.
+ * @return mixed
+ *   TRUE for success, Array for reference count block, or FALSE in the event
+ *   of an error.
+ *
+ * @see hook_file_references()
+ * @see file_delete_plain()
+ */
+function file_delete($file, $force = FALSE) {
+  // If any module returns a value from the reference hook, the
+  // file will not be deleted from Drupal, but file_delete will
+  // return a populated array that tests as TRUE.
+  if (!$force && ($references = module_invoke_all('file_references', $file))) {
+    return $references;
+  }
+
+  // Let other modules clean up on delete.
+  module_invoke_all('file_delete', $file);
+
+  // Make sure the file is deleted before removing its row from the
+  // database, so UIs can still find the file in the database.
+  if (file_delete_plain($file->filepath)) {
+    db_query('DELETE FROM {files} WHERE fid = %d', array($file->fid));
+    return TRUE;
+  }
+  return FALSE;
 }
 
 /**
  * Delete a file.
  *
- * @param $path A string containing a file path.
- * @return TRUE for success, FALSE for failure.
+ * This function should be used when the file to be deleted does not have an
+ * entry recorded in the files table.
+ *
+ * @param $path
+ *   A string containing a file path.
+ * @return
+ *   TRUE for success or path does not exist, or FALSE in the event of an
+ *   error.
+ *
+ * @see file_delete()
  */
-function file_delete($path) {
+function file_delete_plain($path) {
+  if (is_dir($path)) {
+    watchdog('file', t('%path is a directory and cannot be removed with file_delete_plain.', array('%path' => $path)), WATCHDOG_ERROR);
+    return FALSE;
+  }
   if (is_file($path)) {
     return unlink($path);
   }
+  // Return TRUE for non-existant file, but log that nothing was actually
+  // deleted, as the intended result of file_delete_plain is in fact the
+  // current state.
+  if (!file_exists($path)) {
+    watchdog('file', t('The file %path was not deleted, because it does not exist.', array('%path' => $path)), WATCHDOG_NOTICE);
+    return TRUE;
+  }
+  // Catch all for everything else: sockets, symbolic links, etc.
+  return FALSE;
 }
 
 /**
  * Determine total disk space used by a single user or the whole filesystem.
  *
  * @param $uid
- *   An optional user id. A NULL value returns the total space used
- *   by all files.
+ *   Optional. A user id, specifying NULL returns the total space used by all
+ *   non-temporary files.
+ * @param $status
+ *   Optional. File Status to return. Combine with a bitwise OR(|) to return
+ *   multiple statuses. The default status is FILE_STATUS_PERMANENT.
+ * @return
+ *   An integer containing the number of bytes used.
  */
-function file_space_used($uid = NULL) {
+function file_space_used($uid = NULL, $status = FILE_STATUS_PERMANENT) {
   if (isset($uid)) {
-    return (int) db_result(db_query('SELECT SUM(filesize) FROM {files} WHERE uid = %d', $uid));
+    return (int)db_result(db_query('SELECT SUM(filesize) FROM {files} WHERE uid = %d AND status & %d', array($uid, $status)));
   }
-  return (int) db_result(db_query('SELECT SUM(filesize) FROM {files}'));
+  return (int)db_result(db_query('SELECT SUM(filesize) FROM {files} WHERE status & %d', array($status)));
 }
 
 /**
  * Saves a file upload to a new location. The source file is validated as a
  * proper upload and handled as such.
  *
- * The file will be added to the files table as a temporary file. Temporary files
- * are periodically cleaned. To make the file permanent file call
+ * The file will be added to the files table as a temporary file. Temporary
+ * files are periodically cleaned. To make the file permanent file call
  * file_set_status() to change its status.
  *
  * @param $source
@@ -502,7 +660,7 @@ function file_space_used($uid = NULL) {
  *   functions should return an array of error messages, an empty array
  *   indicates that the file passed validation. The functions will be called in
  *   the order specified.
- * @param $dest
+ * @param $destination
  *   A string containing the directory $source should be copied to. If this is
  *   not provided or is not writable, the temporary directory will be used.
  * @param $replace
@@ -510,25 +668,27 @@ function file_space_used($uid = NULL) {
  *   destination directory should overwritten. A false value will generate a
  *   new, unique filename in the destination directory.
  * @return
- *   An object containing the file information, or FALSE in the event of an error.
+ *   An object containing the file information, or FALSE in the event of an
+ *   error.
  */
-function file_save_upload($source, $validators = array(), $dest = FALSE, $replace = FILE_EXISTS_RENAME) {
+function file_save_upload($source, $validators = array(), $destination = FALSE, $replace = FILE_EXISTS_RENAME) {
   global $user;
   static $upload_cache;
 
-  // Add in our check of the the file name length.
-  $validators['file_validate_name_length'] = array();
-
   // Return cached objects without processing since the file will have
   // already been processed and the paths in _FILES will be invalid.
   if (isset($upload_cache[$source])) {
     return $upload_cache[$source];
   }
 
+  // Add in our check of the the file name length.
+  $validators['file_validate_name_length'] = array();
+
+
   // If a file was uploaded, process it.
   if (isset($_FILES['files']) && $_FILES['files']['name'][$source] && is_uploaded_file($_FILES['files']['tmp_name'][$source])) {
-    // Check for file upload errors and return FALSE if a
-    // lower level system error occurred.
+    // Check for file upload errors and return FALSE if a lower level system
+    // error occurred.
     switch ($_FILES['files']['error'][$source]) {
       // @see http://php.net/manual/en/features.file-upload.errors.php
       case UPLOAD_ERR_OK:
@@ -560,9 +720,12 @@ function file_save_upload($source, $vali
 
     // Begin building file object.
     $file = new stdClass();
+    $file->uid      = $user->uid;
+    $file->status   = FILE_STATUS_TEMPORARY;
     $file->filename = file_munge_filename(trim(basename($_FILES['files']['name'][$source]), '.'), $extensions);
     $file->filepath = $_FILES['files']['tmp_name'][$source];
     $file->filemime = file_get_mimetype($file->filename);
+    $file->filesize = $_FILES['files']['size'][$source];
 
     // Rename potentially executable files, to help prevent exploits.
     if (preg_match('/\.(php|pl|py|cgi|asp|js)$/i', $file->filename) && (substr($file->filename, -4) != '.txt')) {
@@ -573,26 +736,21 @@ function file_save_upload($source, $vali
 
     // If the destination is not provided, or is not writable, then use the
     // temporary directory.
-    if (empty($dest) || file_check_path($dest) === FALSE) {
-      $dest = file_directory_temp();
+    if (empty($destination) || file_check_path($destination) === FALSE) {
+      $destination = file_directory_temp();
     }
 
     $file->source = $source;
-    $file->destination = file_destination(file_create_path($dest . '/' . $file->filename), $replace);
-    $file->filesize = $_FILES['files']['size'][$source];
+    $file->destination = file_destination(file_create_path($destination . '/' . $file->filename), $replace);
 
-    // Call the validation functions.
-    $errors = array();
-    foreach ($validators as $function => $args) {
-      array_unshift($args, $file);
-      $errors = array_merge($errors, call_user_func_array($function, $args));
-    }
+    // Call the validation functions specified by this function's caller.
+    $errors = file_validate($file, $validators);
 
-    // Check for validation errors.
+    // Check for errors.
     if (!empty($errors)) {
-      $message = t('The selected file %name could not be uploaded.', array('%name' => $file->filename));
+      $message = t('The specified file %name could not be uploaded.', array('%name' => $file->filename));
       if (count($errors) > 1) {
-        $message .= '<ul><li>' . implode('</li><li>', $errors) . '</li></ul>';
+        $message .= theme('item_list', $errors);
       }
       else {
         $message .= ' ' . array_pop($errors);
@@ -601,8 +759,9 @@ function file_save_upload($source, $vali
       return FALSE;
     }
 
-    // Move uploaded files from PHP's upload_tmp_dir to Drupal's temporary directory.
-    // This overcomes open_basedir restrictions for future file operations.
+    // Move uploaded files from PHP's upload_tmp_dir to Drupal's temporary
+    // directory. This overcomes open_basedir restrictions for future file
+    // operations.
     $file->filepath = $file->destination;
     if (!move_uploaded_file($_FILES['files']['tmp_name'][$source], $file->filepath)) {
       form_set_error($source, t('File upload error. Could not move uploaded file.'));
@@ -610,15 +769,11 @@ function file_save_upload($source, $vali
       return FALSE;
     }
 
-    // If we made it this far it's safe to record this file in the database.
-    $file->uid = $user->uid;
-    $file->status = FILE_STATUS_TEMPORARY;
-    $file->timestamp = $_SERVER['REQUEST_TIME'];
-    drupal_write_record('files', $file);
-
-    // Add file to the cache.
-    $upload_cache[$source] = $file;
-    return $file;
+    if ($file = file_save($file)) {
+      // Add file to the cache.
+      $upload_cache[$source] = $file;
+      return $file;
+    }
   }
   return FALSE;
 }
@@ -634,6 +789,9 @@ function file_save_upload($source, $vali
 function file_validate_name_length($file) {
   $errors = array();
 
+  if (empty($file->filename)) {
+    $errors[] = t('Its name is empty. Please give a name to the file.');
+  }
   if (strlen($file->filename) > 255) {
     $errors[] = t('Its name exceeds the 255 characters limit. Please rename the file and try again.');
   }
@@ -641,27 +799,24 @@ function file_validate_name_length($file
 }
 
 /**
- * Check that the filename ends with an allowed extension. This check is not
- * enforced for the user #1.
+ * Check that the filename ends with an allowed extension.
  *
  * @param $file
  *   A Drupal file object.
  * @param $extensions
  *   A string with a space separated
  * @return
- *   An array. If the file extension is not allowed, it will contain an error message.
+ *   An array. If the file extension is not allowed, it will contain an error
+ *   message.
  */
 function file_validate_extensions($file, $extensions) {
   global $user;
 
   $errors = array();
 
-  // Bypass validation for uid  = 1.
-  if ($user->uid != 1) {
-    $regex = '/\.(' . preg_replace('/ +/', '|', preg_quote($extensions)) . ')$/i';
-    if (!preg_match($regex, $file->filename)) {
-      $errors[] = t('Only files with the following extensions are allowed: %files-allowed.', array('%files-allowed' => $extensions));
-    }
+  $regex = '/\.(' . preg_replace('/ +/', '|', preg_quote($extensions)) . ')$/i';
+  if (!preg_match($regex, $file->filename)) {
+    $errors[] = t('Only files with the following extensions are allowed: %files-allowed.', array('%files-allowed' => $extensions));
   }
   return $errors;
 }
@@ -676,10 +831,11 @@ function file_validate_extensions($file,
  *   An integer specifying the maximum file size in bytes. Zero indicates that
  *   no limit should be enforced.
  * @param $$user_limit
- *   An integer specifying the maximum number of bytes the user is allowed. Zero
- *   indicates that no limit should be enforced.
+ *   An integer specifying the maximum number of bytes the user is allowed.
+ *   Zero indicates that no limit should be enforced.
  * @return
- *   An array. If the file size exceeds limits, it will contain an error message.
+ *   An array. If the file size exceeds limits, it will contain an error
+ *   message.
  */
 function file_validate_size($file, $file_limit = 0, $user_limit = 0) {
   global $user;
@@ -724,15 +880,16 @@ function file_validate_is_image(&$file) 
  * maximum and minimum dimensions. Non-image files will be ignored.
  *
  * @param $file
- *   A Drupal file object. This function may resize the file affecting its size.
+ *   A Drupal file object. This function may resize the file affecting its
+ *   size.
  * @param $maximum_dimensions
  *   An optional string in the form WIDTHxHEIGHT e.g. '640x480' or '85x85'. If
  *   an image toolkit is installed the image will be resized down to these
  *   dimensions. A value of 0 indicates no restriction on size, so resizing
  *   will be attempted.
  * @param $minimum_dimensions
- *   An optional string in the form WIDTHxHEIGHT. This will check that the image
- *   meets a minimum size. A value of 0 indicates no restriction.
+ *   An optional string in the form WIDTHxHEIGHT. This will check that the
+ *   image meets a minimum size. A value of 0 indicates no restriction.
  * @return
  *   An array. If the file is an image and did not meet the requirements, it
  *   will contain an error message.
@@ -774,47 +931,98 @@ function file_validate_image_resolution(
 }
 
 /**
- * Save a string to the specified destination.
+ * Save a string to the specified destination and create a database file entry.
  *
- * @param $data A string containing the contents of the file.
- * @param $dest A string containing the destination location.
- * @param $replace Replace behavior when the destination file already exists.
- *   - FILE_EXISTS_REPLACE - Replace the existing file
- *   - FILE_EXISTS_RENAME - Append _{incrementing number} until the filename is unique
+ * @param $data
+ *   A string containing the contents of the file.
+ * @param $destination
+ *   A string containing the destination location. If no value is provided
+ *   then a randomly name will be generated and the file saved in Drupal's
+ *   files directory.
+ * @param $replace
+ *   Replace behavior when the destination file already exists:
+ *   - FILE_EXISTS_REPLACE - Replace the existing file.
+ *   - FILE_EXISTS_RENAME - Append _{incrementing number} until the filename is
+ *                          unique.
  *   - FILE_EXISTS_ERROR - Do nothing and return FALSE.
+ * @return
+ *   A string containing the resulting filename or FALSE on error
  *
- * @return A string containing the resulting filename or FALSE on error
+ * @see file_save_data_plain()
  */
-function file_save_data($data, $dest, $replace = FILE_EXISTS_RENAME) {
-  $temp = file_directory_temp();
-  // On Windows, tempnam() requires an absolute path, so we use realpath().
-  $file = tempnam(realpath($temp), 'file');
-  if (!$fp = fopen($file, 'wb')) {
-    drupal_set_message(t('The file could not be created.'), 'error');
-    return FALSE;
+function file_save_data($data, $destination = NULL, $replace = FILE_EXISTS_RENAME) {
+  global $user;
+
+  if ($filepath = file_save_data_plain($data, $destination, $replace)) {
+    // Create a file object.
+    $file = new stdClass();
+    $file->filepath = $filepath;
+    $file->filename = basename($file->filepath);
+    $file->filemime = file_get_mimetype($file->filepath);
+    $file->uid      = $user->uid;
+    $file->status   = FILE_STATUS_PERMANENT;
+    return file_save($file);
   }
-  fwrite($fp, $data);
-  fclose($fp);
+  return FALSE;
+}
 
-  if (!file_move($file, $dest, $replace)) {
+/**
+ * Save a string to the specified destination.
+ *
+ * This function is identical to file_save_data() except the file will not be
+ * saved to the files table.
+ *
+ * @param $data
+ *   A string containing the contents of the file.
+ * @param $destination
+ *   A string containing the destination location. If no value is provided
+ *   then a randomly name will be generated and the file saved in Drupal's
+ *   files directory.
+ * @param $replace
+ *   Replace behavior when the destination file already exists:
+ *   - FILE_EXISTS_REPLACE - Replace the existing file.
+ *   - FILE_EXISTS_RENAME - Append _{incrementing number} until the filename is
+ *                          unique.
+ *   - FILE_EXISTS_ERROR - Do nothing and return FALSE.
+ * @return
+ *   A string with the path of the resulting file, or FALSE on error.
+ *
+ * @see file_save_data()
+ */
+function file_save_data_plain($data, $destination = NULL, $replace = FILE_EXISTS_RENAME) {
+  global $user;
+
+  // Write the data to a temporary file.
+  $temp_name = tempnam(file_directory_temp(), 'file');
+  if (file_put_contents($temp_name, $data) === FALSE) {
+    drupal_set_message(t('The file could not be created.'), 'error');
     return FALSE;
   }
 
-  return $file;
+  // Move the file to its final destination.
+  return file_move_plain($temp_name, $destination, $replace);
 }
 
 /**
  * Set the status of a file.
  *
- * @param file A Drupal file object
- * @param status A status value to set the file to.
- * @return FALSE on failure, TRUE on success and $file->status will contain the
- *     status.
+ * @param $file
+ *   A Drupal file object.
+ * @param $status
+ *   A status value to set the file to.
+ *   - FILE_STATUS_TEMPORARY - A temporary file that Drupal's garbage
+ *                             collection will remove.
+ *   - FILE_STATUS_PERMANENT - A permanent file that Drupal's garbage
+ *                             collection will not remove.
+ * @return
+ *   File object if the change is successful, or FALSE in the event of an
+ *   error.
  */
-function file_set_status(&$file, $status) {
-  if (db_query('UPDATE {files} SET status = %d WHERE fid = %d', $status, $file->fid)) {
+function file_set_status($file, $status =  FILE_STATUS_PERMANENT) {
+  if (db_query('UPDATE {files} SET status = %d WHERE fid = %d', array($status, $file->fid))) {
     $file->status = $status;
-    return TRUE;
+    module_invoke_all('file_status', $file);
+    return $file;
   }
   return FALSE;
 }
@@ -823,8 +1031,10 @@ function file_set_status(&$file, $status
  * Transfer file using http to client. Pipes a file through Drupal to the
  * client.
  *
- * @param $source File to transfer.
- * @param $headers An array of http headers to send along with file.
+ * @param $source
+ *   String specifying the file path to transfer.
+ * @param $headers
+ *   An array of http headers to send along with file.
  */
 function file_transfer($source, $headers) {
   ob_end_clean();
@@ -907,7 +1117,8 @@ function file_download() {
  * @param $min_depth
  *   Minimum depth of directories to return files from.
  * @param $depth
- *   Current depth of recursion. This parameter is only used internally and should not be passed.
+ *   Current depth of recursion. This parameter is only used internally and
+ *   should not be passed.
  *
  * @return
  *   An associative array (keyed on the provided key) of objects with
@@ -926,7 +1137,8 @@ function file_scan_directory($dir, $mask
           $files = array_merge(file_scan_directory("$dir/$file", $mask, $nomask, $callback, $recurse, $key, $min_depth, $depth + 1), $files);
         }
         elseif ($depth >= $min_depth && ereg($mask, $file)) {
-          // Always use this match over anything already set in $files with the same $$key.
+          // Always use this match over anything already set in $files with the
+          // same $$key.
           $filename = "$dir/$file";
           $basename = basename($file);
           $name = substr($basename, 0, strrpos($basename, '.'));
@@ -965,13 +1177,11 @@ function file_directory_temp() {
 
     // Operating system specific dirs.
     if (substr(PHP_OS, 0, 3) == 'WIN') {
-      $directories[] = 'c:\\windows\\temp';
-      $directories[] = 'c:\\winnt\\temp';
-      $path_delimiter = '\\';
+      $directories[] = 'c:/windows/temp';
+      $directories[] = 'c:/winnt/temp';
     }
     else {
       $directories[] = '/tmp';
-      $path_delimiter = '/';
     }
 
     foreach ($directories as $directory) {
@@ -980,8 +1190,8 @@ function file_directory_temp() {
       }
     }
 
-    // if a directory has been found, use it, otherwise default to 'files/tmp' or 'files\\tmp';
-    $temporary_directory = $temporary_directory ? $temporary_directory : file_directory_path() . $path_delimiter . 'tmp';
+    // if a directory has been found, use it, otherwise default to 'files/tmp'
+    $temporary_directory = $temporary_directory ? $temporary_directory : file_directory_path() . '/tmp';
     variable_set('file_directory_temp', $temporary_directory);
   }
 
@@ -1001,7 +1211,8 @@ function file_directory_path() {
  * Determine the maximum file upload size by querying the PHP settings.
  *
  * @return
- *   A file size limit in bytes based on the PHP upload_max_filesize and post_max_size
+ *   A file size limit in bytes based on the PHP upload_max_filesize and
+ *   post_max_size
  */
 function file_upload_max_size() {
   static $max_size = -1;
@@ -1387,5 +1598,108 @@ function file_get_mimetype($filename, $m
 }
 
 /**
+ * Load a file object from the database.
+ *
+ * @param $param
+ *   Either the id of a file or an array of conditions to match against in the
+ *   database query
+ * @param $reset
+ *   Whether to reset the internal file_load cache.
+ * @return
+ *   A file object.
+ */
+function file_load($param, $reset = NULL) {
+  static $files = array();
+
+  if ($reset) {
+    $files = array();
+  }
+
+  $arguments = array();
+  if (is_numeric($param)) {
+    if (isset($files[(string) $param])) {
+      return is_object($files[$param]) ? clone $files[$param] : $files[$param];
+    }
+    $cond = 'f.fid = %d';
+    $arguments[] = $param;
+  }
+  elseif (is_array($param)) {
+    // Turn the conditions into a query.
+    $cond = array();
+    foreach ($param as $key => $value) {
+      $cond[] = 'f.' . db_escape_table($key) . " = '%s'";
+      $arguments[] = $value;
+    }
+    $cond = implode(' AND ', $cond);
+  }
+  else {
+    return FALSE;
+  }
+  $file = db_fetch_object(db_query('SELECT f.* FROM {files} f WHERE ' . $cond, $arguments));
+
+  if ($file && $file->fid) {
+    module_invoke_all('file_load', $file);
+
+    // Cache the fully loaded value.
+    $files[(string) $file->fid] = clone $file;
+  }
+
+  return $file;
+}
+
+/**
+ * Check that a file meets the criteria specified by the validators.
+ *
+ * @param $file
+ *   A Drupal file object.
+ * @param $validators
+ *   An optional, associative array of callback functions used to validate the
+ *   file. The keys are function names and the values arrays of callback
+ *   parameters which will be passed in after the user and file objects. The
+ *   functions should return an array of error messages, an empty array
+ *   indicates that the file passed validation. The functions will be called in
+ *   the order specified.
+ * @return
+ *   An array contaning validation error messages.
+ */
+function file_validate(&$file, $validators = array()) {
+  // Call the validation functions specified by this function's caller.
+  $errors = array();
+  foreach ($validators as $function => $args) {
+    array_unshift($args, $file);
+    $errors = array_merge($errors, call_user_func_array($function, $args));
+  }
+
+  // Let other modules perform validation on the new file.
+  return array_merge($errors, module_invoke_all('file_validate', $file));
+}
+/**
+ * Save a file object to the database.
+ *
+ * If the $file->fid is not set a new record will be added. Re-saving an
+ * existing file will not change its status.
+ *
+ * @param $file
+ *   A file object returned by file_load().
+ * @return
+ *   The updated file object.
+ */
+function file_save($file) {
+  $file->timestamp = $_SERVER['REQUEST_TIME'];
+  $file->filesize = filesize($file->filepath);
+
+  if (empty($file->fid)) {
+    drupal_write_record('files', $file);
+    module_invoke_all('file_insert', $file);
+  }
+  else {
+    drupal_write_record('files', $file, 'fid');
+    module_invoke_all('file_update', $file);
+  }
+
+  return $file;
+}
+
+/**
  * @} End of "defgroup file".
  */
Index: modules/blogapi/blogapi.module
===================================================================
RCS file: /cvs/drupal/drupal/modules/blogapi/blogapi.module,v
retrieving revision 1.123
diff -u -p -r1.123 blogapi.module
--- modules/blogapi/blogapi.module	6 Sep 2008 08:36:19 -0000	1.123
+++ modules/blogapi/blogapi.module	7 Sep 2008 00:07:45 -0000
@@ -385,12 +385,12 @@ function blogapi_metaweblog_new_media_ob
     return blogapi_error(t('No file sent.'));
   }
 
-  if (!$file = file_save_data($data, $name)) {
+  if (!$filepath = file_save_data_plain($data, $name)) {
     return blogapi_error(t('Error storing file.'));
   }
 
   // Return the successful result.
-  return array('url' => file_create_url($file), 'struct');
+  return array('url' => file_create_url($filepath), 'struct');
 }
 /**
  * Blogging API callback. Returns a list of the taxonomy terms that can be
Index: modules/color/color.module
===================================================================
RCS file: /cvs/drupal/drupal/modules/color/color.module,v
retrieving revision 1.43
diff -u -p -r1.43 color.module
--- modules/color/color.module	31 Aug 2008 09:15:12 -0000	1.43
+++ modules/color/color.module	7 Sep 2008 00:07:46 -0000
@@ -308,7 +308,7 @@ function color_scheme_form_submit($form,
   foreach ($info['copy'] as $file) {
     $base = basename($file);
     $source = $paths['source'] . $file;
-    file_copy($source, $paths['target'] . $base);
+    file_copy_plain($source, $paths['target'] . $base);
     $paths['map'][$file] = $base;
     $paths['files'][] = $paths['target'] . $base;
   }
Index: modules/simpletest/simpletest.install
===================================================================
RCS file: /cvs/drupal/drupal/modules/simpletest/simpletest.install,v
retrieving revision 1.7
diff -u -p -r1.7 simpletest.install
--- modules/simpletest/simpletest.install	16 Aug 2008 20:57:14 -0000	1.7
+++ modules/simpletest/simpletest.install	7 Sep 2008 00:07:46 -0000
@@ -33,7 +33,7 @@ function simpletest_install() {
       $original = drupal_get_path('module', 'simpletest') . '/files';
       $files = file_scan_directory($original, '(html|image|javascript|php|sql)-.*');
       foreach ($files as $file) {
-        file_copy($file->filename, $path . '/' . $file->basename);
+        file_copy_plain($file->filename, $path . '/' . $file->basename);
       }
       $generated = TRUE;
     }
Index: modules/simpletest/simpletest.module
===================================================================
RCS file: /cvs/drupal/drupal/modules/simpletest/simpletest.module,v
retrieving revision 1.11
diff -u -p -r1.11 simpletest.module
--- modules/simpletest/simpletest.module	21 Aug 2008 19:36:38 -0000	1.11
+++ modules/simpletest/simpletest.module	7 Sep 2008 00:07:46 -0000
@@ -558,7 +558,7 @@ function simpletest_clean_temporary_dire
         simpletest_clean_temporary_directory($file_path);
       }
       else {
-        file_delete($file_path);
+        file_delete_plain($file_path);
       }
     }
   }
Index: modules/system/system.admin.inc
===================================================================
RCS file: /cvs/drupal/drupal/modules/system/system.admin.inc,v
retrieving revision 1.87
diff -u -p -r1.87 system.admin.inc
--- modules/system/system.admin.inc	6 Sep 2008 08:36:21 -0000	1.87
+++ modules/system/system.admin.inc	7 Sep 2008 00:07:46 -0000
@@ -338,9 +338,9 @@ function system_theme_settings(&$form_st
     // The image was saved using file_save_upload() and was added to the
     // files table as a temporary file. We'll make a copy and let the garbage
     // collector delete the original upload.
-    if (file_copy($file, $filename, FILE_EXISTS_REPLACE)) {
+    if ($filepath = file_copy_plain($file->filepath, $filename, FILE_EXISTS_REPLACE)) {
       $_POST['default_logo'] = 0;
-      $_POST['logo_path'] = $file->filepath;
+      $_POST['logo_path'] = $filepath;
       $_POST['toggle_logo'] = 1;
     }
   }
@@ -353,9 +353,9 @@ function system_theme_settings(&$form_st
     // The image was saved using file_save_upload() and was added to the
     // files table as a temporary file. We'll make a copy and let the garbage
     // collector delete the original upload.
-    if (file_copy($file, $filename)) {
+    if ($filepath = file_copy_plain($file->filepath, $filename, FILE_EXISTS_REPLACE)) {
       $_POST['default_favicon'] = 0;
-      $_POST['favicon_path'] = $file->filepath;
+      $_POST['favicon_path'] = $filepath;
       $_POST['toggle_favicon'] = 1;
     }
   }
Index: modules/system/system.module
===================================================================
RCS file: /cvs/drupal/drupal/modules/system/system.module,v
retrieving revision 1.617
diff -u -p -r1.617 system.module
--- modules/system/system.module	6 Sep 2008 08:36:21 -0000	1.617
+++ modules/system/system.module	7 Sep 2008 00:07:46 -0000
@@ -1401,12 +1401,14 @@ function system_cron() {
     if (file_exists($file->filepath)) {
       // If files that exist cannot be deleted, continue so the database remains
       // consistent.
-      if (!file_delete($file->filepath)) {
+      if (!file_delete($file)) {
         watchdog('file system', 'Could not delete temporary file "%path" during garbage collection', array('%path' => $file->filepath), WATCHDOG_ERROR);
         continue;
       }
     }
-    db_query('DELETE FROM {files} WHERE fid = %d', $file->fid);
+    else {
+      db_query('DELETE FROM {files} WHERE fid = %d', $file->fid);
+    }
   }
 }
 
Index: modules/upload/upload.admin.inc
===================================================================
RCS file: /cvs/drupal/drupal/modules/upload/upload.admin.inc,v
retrieving revision 1.10
diff -u -p -r1.10 upload.admin.inc
--- modules/upload/upload.admin.inc	16 Jul 2008 21:59:28 -0000	1.10
+++ modules/upload/upload.admin.inc	7 Sep 2008 00:07:46 -0000
@@ -74,11 +74,10 @@ function upload_admin_settings() {
     '#field_suffix' => '<kbd>' . t('WIDTHxHEIGHT') . '</kbd>'
   );
   $form['settings_general']['upload_list_default'] = array(
-    '#type' => 'select',
+    '#type' => 'checkbox',
     '#title' => t('List files by default'),
     '#default_value' => variable_get('upload_list_default', 1),
-    '#options' => array(0 => t('No'), 1 => t('Yes')),
-    '#description' => t('Display attached files when viewing a post.'),
+    '#description' => t('Determines whether attached files are shown to users by default.'),
   );
 
   $form['settings_general']['upload_extensions_default'] = array(
Index: modules/upload/upload.module
===================================================================
RCS file: /cvs/drupal/drupal/modules/upload/upload.module,v
retrieving revision 1.205
diff -u -p -r1.205 upload.module
--- modules/upload/upload.module	24 Jul 2008 16:25:19 -0000	1.205
+++ modules/upload/upload.module	7 Sep 2008 00:07:46 -0000
@@ -263,6 +263,38 @@ function upload_form_alter(&$form, $form
 }
 
 /**
+ * Implementation of hook_file_load().
+ */
+function upload_file_load(&$file, $source = NULL) {
+  // Add the upload specific data into the file object. 
+  $values = db_fetch_array(db_query('SELECT * FROM {upload} u WHERE u.fid = %d', $file->fid));
+  foreach ((array)$values as $key => $value) {
+    $file->{$key} = $value;
+  }
+}
+
+/**
+ * Implementation of hook_file_references().
+ */
+function upload_file_references(&$file, $source = NULL) {
+  // If upload.module is still using a file, do not let other modules delete it.
+  $count = db_result(db_query('SELECT count(*) FROM {upload} WHERE fid = %d', $file->fid));
+  if ($count) {
+    // return the name of the module and how many references it has to the file.
+    return array('upload' => $count);
+  }
+}
+ 
+/**
+ * Implementation of hook_file_delete().
+ */
+function upload_file_delete(&$file, $source = NULL) {
+  // Delete all information associated with the file.
+  db_query('DELETE FROM {upload} WHERE fid = %d', $file->fid);
+}
+
+
+/**
  * Implementation of hook_nodeapi().
  */
 function upload_nodeapi(&$node, $op, $teaser) {
@@ -406,13 +438,15 @@ function upload_save(&$node) {
       // If the file isn't used by any other revisions delete it.
       $count = db_result(db_query('SELECT COUNT(fid) FROM {upload} WHERE fid = %d', $fid));
       if ($count < 1) {
-        file_delete($file->filepath);
+        file_delete($file);
         db_query('DELETE FROM {files} WHERE fid = %d', $fid);
       }
 
       // Remove it from the session in the case of new uploads,
       // that you want to disassociate before node submission.
       unset($_SESSION['upload_files'][$fid]);
+      // Try to clean up a file that is no longer in use.
+      file_delete($file);
       // Move on, so the removed file won't be added to new revisions.
       continue;
     }
@@ -420,13 +454,12 @@ function upload_save(&$node) {
     // Create a new revision, or associate a new file needed.
     if (!empty($node->old_vid) || isset($_SESSION['upload_files'][$fid])) {
       db_query("INSERT INTO {upload} (fid, nid, vid, list, description, weight) VALUES (%d, %d, %d, %d, '%s', %d)", $file->fid, $node->nid, $node->vid, $file->list, $file->description, $file->weight);
-      file_set_status($file, FILE_STATUS_PERMANENT);
     }
     // Update existing revision.
     else {
       db_query("UPDATE {upload} SET list = %d, description = '%s', weight = %d WHERE fid = %d AND vid = %d", $file->list, $file->description, $file->weight, $file->fid, $node->vid);
-      file_set_status($file, FILE_STATUS_PERMANENT);
     }
+    file_set_status($file, FILE_STATUS_PERMANENT);
   }
   // Empty the session storage after save. We use this variable to track files
   // that haven't been related to the node yet.
@@ -434,38 +467,23 @@ function upload_save(&$node) {
 }
 
 function upload_delete($node) {
-  $files = array();
-  $result = db_query('SELECT DISTINCT f.* FROM {upload} u INNER JOIN {files} f ON u.fid = f.fid WHERE u.nid = %d', $node->nid);
-  while ($file = db_fetch_object($result)) {
-    $files[$file->fid] = $file;
+  db_query('DELETE FROM {upload} WHERE nid = %d', $node->nid);
+  if (!is_array($node->files)) {
+    return; 
   }
-
-  foreach ($files as $fid => $file) {
-    // Delete all files associated with the node
-    db_query('DELETE FROM {files} WHERE fid = %d', $fid);
-    file_delete($file->filepath);
+  foreach($node->files as $file) {
+    file_delete($file);
   }
-
-  // Delete all file revision information associated with the node
-  db_query('DELETE FROM {upload} WHERE nid = %d', $node->nid);
 }
 
 function upload_delete_revision($node) {
-  if (is_array($node->files)) {
-    foreach ($node->files as $file) {
-      // Check if the file will be used after this revision is deleted
-      $count = db_result(db_query('SELECT COUNT(fid) FROM {upload} WHERE fid = %d', $file->fid));
-
-      // if the file won't be used, delete it
-      if ($count < 2) {
-        db_query('DELETE FROM {files} WHERE fid = %d', $file->fid);
-        file_delete($file->filepath);
-      }
-    }
-  }
-
-  // delete the revision
   db_query('DELETE FROM {upload} WHERE vid = %d', $node->vid);
+  if (!is_array($node->files)) {
+    return;
+  }
+  foreach ($node->files as $file) {
+    file_delete($file);
+  }
 }
 
 function _upload_form($node) {
@@ -479,11 +497,11 @@ function _upload_form($node) {
   if (!empty($node->files) && is_array($node->files)) {
     $form['files']['#theme'] = 'upload_form_current';
     $form['files']['#tree'] = TRUE;
-    foreach ($node->files as $key => $file) {
+    foreach ($node->files as $file) {
       $file = (object)$file;
-      $description = file_create_url($file->filepath);
-      $description = "<small>" . check_plain($description) . "</small>";
-      $form['files'][$key]['description'] = array('#type' => 'textfield', '#default_value' => !empty($file->description) ? $file->description : $file->filename, '#maxlength' => 256, '#description' => $description );
+      $key = $file->fid;
+
+      $form['files'][$key]['description'] = array('#type' => 'textfield', '#default_value' => !empty($file->description) ? $file->description : $file->filename, '#maxlength' => 256, '#description' => '<small>' . file_create_url($file->filepath) . '</small>');
       $form['files'][$key]['size'] = array('#markup' => format_size($file->filesize));
       $form['files'][$key]['remove'] = array('#type' => 'checkbox', '#default_value' => !empty($file->remove));
       $form['files'][$key]['list'] = array('#type' => 'checkbox',  '#default_value' => $file->list);
@@ -498,12 +516,26 @@ function _upload_form($node) {
 
   if (user_access('upload files')) {
     $limits = _upload_file_limits($user);
+
+    $limit_description = t('The maximum size of file uploads is %filesize. ', array('%filesize' => format_size($limits['file_size'])));
+    if (!empty($limits['resolution'])) {
+      if (image_get_toolkit()) {
+        $limit_description .= t('Images larger than %resolution will be resized. ', array('%resolution' => $limits['resolution']));
+      }
+      else {
+        $limit_description .= t('Images may not be larger than %resolution. ', array('%resolution' => $limits['resolution']));
+      }
+    }
+    if ($user->uid != 1) {
+      $limit_description .= t('Only files with the following extensions may be uploaded: %extensions. ', array('%extensions' => $limits['extensions']));
+    }
+
     $form['new']['#weight'] = 10;
     $form['new']['upload'] = array(
       '#type' => 'file',
       '#title' => t('Attach new file'),
       '#size' => 40,
-      '#description' => ($limits['resolution'] ? t('Images are larger than %resolution will be resized. ', array('%resolution' => $limits['resolution'])) : '') . t('The maximum upload size is %filesize. Only files with the following extensions may be uploaded: %extensions. ', array('%extensions' => $limits['extensions'], '%filesize' => format_size($limits['file_size']))),
+      '#description' => $limit_description,
     );
     $form['new']['attach'] = array(
       '#type' => 'submit',
@@ -565,9 +597,9 @@ function upload_load($node) {
   $files = array();
 
   if ($node->vid) {
-    $result = db_query('SELECT * FROM {files} f INNER JOIN {upload} r ON f.fid = r.fid WHERE r.vid = %d ORDER BY r.weight, f.fid', $node->vid);
+    $result = db_query('SELECT u.fid FROM {upload} u WHERE u.vid = %d ORDER BY u.fid', $node->vid);
     while ($file = db_fetch_object($result)) {
-      $files[$file->fid] = $file;
+      $files[$file->fid] = file_load($file->fid);
     }
   }
 
Index: modules/user/user.module
===================================================================
RCS file: /cvs/drupal/drupal/modules/user/user.module,v
retrieving revision 1.918
diff -u -p -r1.918 user.module
--- modules/user/user.module	6 Sep 2008 08:36:22 -0000	1.918
+++ modules/user/user.module	7 Sep 2008 00:07:47 -0000
@@ -406,8 +406,8 @@ function user_validate_picture(&$form, &
   );
   if ($file = file_save_upload('picture_upload', $validators)) {
     // Remove the old picture.
-    if (isset($form_state['values']['_account']->picture) && file_exists($form_state['values']['_account']->picture)) {
-      file_delete($form_state['values']['_account']->picture);
+    if (isset($form_state['values']['_account']->picture)) {
+      file_delete_plain($form_state['values']['_account']->picture);
     }
 
     // The image was saved using file_save_upload() and was added to the
@@ -415,8 +415,8 @@ function user_validate_picture(&$form, &
     // collector delete the original upload.
     $info = image_get_info($file->filepath);
     $destination = variable_get('user_picture_path', 'pictures') . '/picture-' . $form['#uid'] . '.' . $info['extension'];
-    if (file_copy($file, $destination, FILE_EXISTS_REPLACE)) {
-      $form_state['values']['picture'] = $file->filepath;
+    if (file_copy_plain($file->filepath, $destination, FILE_EXISTS_REPLACE)) {
+      $form_state['values']['picture'] = $destination;
     }
     else {
       form_set_error('picture_upload', t("Failed to upload the picture image; the %directory directory doesn't exist or is not writable.", array('%directory' => variable_get('user_picture_path', 'pictures'))));
@@ -839,7 +839,7 @@ function template_preprocess_user_pictur
   $variables['picture'] = '';
   if (variable_get('user_pictures', 0)) {
     $account = $variables['account'];
-    if (!empty($account->picture) && file_exists($account->picture)) {
+    if (!empty($account->picture) && file_exists(file_create_path($account->picture))) {
       $picture = file_create_url($account->picture);
     }
     else if (variable_get('user_picture_default', '')) {
@@ -1537,8 +1537,8 @@ function _user_edit_submit($uid, &$edit)
   $user = user_load(array('uid' => $uid));
   // Delete picture if requested, and if no replacement picture was given.
   if (!empty($edit['picture_delete'])) {
-    if ($user->picture && file_exists($user->picture)) {
-      file_delete($user->picture);
+    if ($user->picture) {
+      file_delete_plain($user->picture);
     }
     $edit['picture'] = '';
   }