icsearch/dbsf.install File Reference

Go to the source code of this file.

Functions
	dbsf_install ()
	dbsf_uninstall ()
	dbsf_schema ()
	dbsf_add_software_option ($name, $dbxref_id, $cvterm_id, $description=NULL)
	dbsf_add_software_blast ()

---

Detailed Description

Install the dbsf module

Requires the tabs and icbasic modules.

See also:

icbasic.module Developed by Alexie Papanicolaou and Ritika Chauhan. University of Exeter. Licensed under GPLv3

TODO: List of things to do/consider

• Add type for software

Definition in file dbsf.install.

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Function Documentation

dbsf_add_software_blast

(

)

Helper function to add BLAST software

Use it as a template for adding plugins

Definition at line 219 of file dbsf.install.

References dbsf_add_software_option(), icbasic_get_add_cv_withnames(), icbasic_get_add_dbxref_withnames(), icbasic_populate_cvterms(), and icbasic_populate_prop().

Referenced by dbsf_install().

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dbsf_add_software_option	(	$	name,
		$	dbxref_id,
		$	cvterm_id,
		$	description = NULL
	)

Save a software option.

Parameters:

	$name	Name of option to add
	$dbxref_id	ID of dbxref to link with dbxref
	$cvterm_id	ID of cvterm to use as type id
	$description	Optionally add a description.

Returns:

Returns FALSE on failure or TRUE on success.

Definition at line 193 of file dbsf.install.

Referenced by dbsf_add_software_blast(), and dbsf_add_software_ssaha2().

dbsf_install

(

)

Custom implementation of the hook_install ().

Uses db_query to change type to boolean (unsupported in Drupal 6) Adds some CVs Looks for include files to include plugins.

Definition at line 28 of file dbsf.install.

References dbsf_add_software_blast(), dbsf_add_software_ssaha2(), and icbasic_add_cv().

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dbsf_schema

(

)

Implementation of hook_schema().

See also:

icbasic.install

Includes new tables for linking resource and role and for software

Definition at line 100 of file dbsf.install.

dbsf_uninstall

(

)

Implementation of hook_uninstall().

Definition at line 88 of file dbsf.install.